doc. Mgr. David Bednář, Ph.D.

2021

• Engineering the protein dynamics of an ancestral luciferase

  SCHENKMAYEROVÁ Andrea RANGEL PAMPLONA PIZARRO PINTO José Gaspar TOUL Martin MAREK Martin HERNYCHOVÁ Lenka PLANAS IGLESIAS Joan LIŠKOVÁ Veronika PLUSKAL Daniel VAŠINA Michal EMOND Stephane DÖRR Mark CHALOUPKOVÁ Radka BEDNÁŘ David PROKOP Zbyněk HOLLFELDER Florian BORNSCHEUER Uwe T. DAMBORSKÝ Jiří

  Article in Periodical

  Nature Communications, year: 2021, volume: 12, edition: 1, DOI

• Exploring mechanism of enzyme catalysis by on-chip transient kinetics coupled with global data analysis and molecular modeling

  HESS David DOČKALOVÁ Veronika KOKKONEN Piia Pauliina BEDNÁŘ David DAMBORSKÝ Jiří DEMELLO Andrew PROKOP Zbyněk STAVRAKIS Stavros

  Article in Periodical

  Chem, year: 2021, volume: 7, edition: 4, DOI

• FireProt(ASR): A Web Server for Fully Automated Ancestral Sequence Reconstruction

  MUSIL Miloš KHAN Rayyan Tariq BEIER Andy ŠTOURAČ Jan KONEGGER Hannes DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Briefings in Bioinformatics, year: 2021, volume: 22, edition: 4, DOI

• FireProt(DB): database of manually curated protein stability data

  ŠTOURAČ Jan DUBRAVA Juraj MUSIL Miloš HORÁČKOVÁ Jana DAMBORSKÝ Jiří MAZURENKO Stanislav BEDNÁŘ David

  Article in Periodical

  Nucleic acids research, year: 2021, volume: 49, edition: D1, DOI

• Fully Automated Ancestral Sequence Reconstruction using FireProtASR

  KHAN Rayyan Tariq MUSIL Miloš DVORSKÝ Jan DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Current Protocols, year: 2021, volume: 1, edition: 2, DOI

• Promiscuous Dehalogenase Activity of the Epoxide Hydrolase CorEH from Corynebacterium sp. C12

  SCHUITEN Eva D. BADENHORST Christoffel P. S. PALM Gottfried J. BERNDT Leona LAMMERS Michael MIČAN Jan BEDNÁŘ David DAMBORSKÝ Jiří BORNSCHEUER Uwe T.

  Article in Periodical

  ACS Catalysis, year: 2021, volume: 11, edition: 10, DOI

• Screening of Natural Compounds as P-Glycoprotein Inhibitors against Multidrug Resistance

  MARQUES Sérgio Manuel ŠUPOLÍKOVÁ Lucie MOLČANOVÁ Lenka ŠMEJKAL Karel BEDNÁŘ David SLANINOVÁ Iva

  Article in Periodical

  BIOMEDICINES, year: 2021, volume: 9, edition: 4, DOI

• Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning

  RANGEL PAMPLONA PIZARRO PINTO José Gaspar VÁVRA Ondřej MARQUES Sérgio Manuel FILIPOVIČ Jiří BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  Computational and Structural Biotechnology Journal, year: 2021, volume: 19, edition: May, DOI

• Simulation of Ligand Transport in Receptors Using CaverDock

  HOZZOVÁ Jana VÁVRA Ondřej BEDNÁŘ David FILIPOVIČ Jiří

  Chapter of a book

  Protein-Ligand Interactions and Drug Design, year: 2021, number of pages: 20 s.

• SoluProt: prediction of soluble protein expression in Escherichia coli

  HON Jiří MARUSIAK Martin MARTINEK Tomas KUNKA Antonín ZENDULKA Jaroslav BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  Bioinformatics, year: 2021, volume: 37, edition: 1, DOI