doc. Mgr. David Bednář, Ph.D.

2022

• A Nonconventional Archaeal Fluorinase Identified by In SilicoMining for Enhanced Fluorine Biocatalysis br

  PARDO Isabel BEDNÁŘ David CALERO Patricia VOLKE Daniel C DAMBORSKÝ Jiří NIKEL Pablo I.

  Peer-reviewed scientific article

  ACS Catalysis, year: 2022, volume: 12, edition: 11, DOI

• Computer-aided engineering of staphylokinase toward enhanced affinity and selectivity for plasmin

  NIKITIN Dmitri MIČAN Jan TOUL Martin BEDNÁŘ David PEŠKOVÁ Michaela KITTOVÁ Patrícia THALEROVÁ Sandra VÍTEČEK Jan DAMBORSKÝ Jiří MIKULÍK Robert FLEISHMAN Sarel J. PROKOP Zbyněk MAREK Martin

  Peer-reviewed scientific article

  Computational and Structural Biotechnology Journal, year: 2022, volume: 20, edition: May 2022, DOI

• Deep Insights into the Specific Evolution of Fungal Hybrid B Heme Peroxidases

  ZÁMOCKÝ Marcel MUSIL Miloš DANCHENKO Maksym FERIANC Peter CHOVANOVÁ Katarína BARÁTH Peter POLJOVKA Andrej BEDNÁŘ David

  Peer-reviewed scientific article

  BIOLOGY-BASEL, year: 2022, volume: 11, edition: 3, DOI

• Fast approximative methods for study of ligand transport and rational design of improved enzymes for biotechnologies

  VÁVRA Ondřej DAMBORSKÝ Jiří BEDNÁŘ David

  Peer-reviewed scientific article

  Biotechnology Advances, year: 2022, volume: 60, edition: November, DOI

• LoopGrafter: a web tool for transplanting dynamical loops for protein engineering

  PLANAS IGLESIAS Joan OPÁLENÝ Filip ULBRICH Pavol ŠTOURAČ Jan SANUSI Zainab Kemi RANGEL PAMPLONA PIZARRO PINTO José Gaspar SMITH Andrea BYŠKA Jan DAMBORSKÝ Jiří KOZLÍKOVÁ Barbora BEDNÁŘ David

  Peer-reviewed scientific article

  Nucleic acids research, year: 2022, volume: 50, edition: W1, DOI

• Mechanism-Based Design of Efficient PET Hydrolases

  WEI Ren VON HAUGWIT Gerlis PFAFF Lara MIČAN Jan BADENHORST Christoffel P. S. LIU Weidong WEBER Gert AUSTIN Harry P. BEDNÁŘ David DAMBORSKÝ Jiří BORNSCHEUER Uwe T.

  Peer-reviewed scientific article

  ACS Catalysis, year: 2022, volume: 12, edition: 6, DOI

• PDBe-KB: collaboratively defining the biological context of structural data

  VARADI Mihaly ANYANGO Stephen ARMSTRONG David BERRISFORD John CHOUDHARY Preeti DESHPANDE Mandar NADZIRIN Nurul NAIR Sreenatha S. PRAVDA Lukas TANWEER Ahsan AL-LAZIKANI Bissan ANDREINI Claudia BARTON Geoffrey J. BEDNÁŘ David BERKA Karel BLUNDELL Tom BROCK Kelly P. MARIA CARAZO Jose DAMBORSKÝ Jiří DAVID Alessia DEY Sucharita DUNBRACK Roland RECIO Fernandez Juan FRATERNALI Franca GIBSON Toby HELMER-CITTERICH Manuela HOKSZA David HOPF Thomas JAKUBEC David KANNAN Natarajan KRIVAK Radoslav KUMAR Manjeet LEVY Emmanuel D. LONDON Nir MACIAS Jose Ramon SRIVATSAN Madhusudhan M. MARKS Debora S. MARTENS Lennart MCGOWAN Stuart A. MCGREIG Jake E. MODI Vivek PARRA Gonzalo R. PEPE Gerardo PIOVESAN Damiano PRILUSKY Jaime PUTIGNANO Valeria RADUSKY Leandro G. RAMASAMY Pathmanaban RAUSCH Atilio O. REUTER Nathalie RODRIGUEZ Luis A. ROLLINS Nathan J. ROSATO Antonio SERRANO Luis SINGH Gulzar SKODA Petr SORZANO Carlos Oscar S. ŠTOURAČ Jan SULKOWSKA Joanna I. SVOBODOVÁ Radka TICHSHENKO Natalia TOSATTO Silvio C. E. VRANKEN Wim WASS Mark N. XUE Dandan ZAIDMAN Daniel THORNTON Janet STERNBERG Michael ORENGO Christine VELANKAR Sameer

  Peer-reviewed scientific article

  Nucleic acids research, year: 2022, volume: 50, edition: D1, DOI

• Tools for computational design and high-throughput screening of therapeutic enzymes

  VAŠINA Michal VELECKÝ Jan PLANAS IGLESIAS Joan MARQUES Sérgio Manuel ŠKAŘUPOVÁ Jana DAMBORSKÝ Jiří BEDNÁŘ David MAZURENKO Stanislav PROKOP Zbyněk

  Peer-reviewed scientific article

  ADVANCED DRUG DELIVERY REVIEWS, year: 2022, volume: 183, edition: April 2022, DOI

2021

• Computational enzyme design for metabolic engineering

  DAMBORSKÝ Jiří BEDNÁŘ David PROKOP Zbyněk MAREK Martin MAZURENKO Stanislav ŠTOURAČ Jan MARQUES Sérgio Manuel FONSECA PINTO Gabriela Filipa PLANAS IGLESIAS Joan MUSIL Miloš HON Jiří VÁVRA Ondřej KHAN Rayyan Tariq FILIPOVIČ Jiří KOZLÍKOVÁ Barbora

  Conference abstract

  Year: 2021, type: Conference abstract

• Engineering protein dynamics for the understanding of divergent evolution of the Renilla luciferase

  TOUL Martin SMITH Andrea RANGEL PAMPLONA PIZARRO PINTO José Gaspar MAREK Martin HERNYCHOVÁ Lenka LIŠKOVÁ Veronika PLUSKAL Daniel EMOND Stephane DÖRR Mark PLANAS IGLESIAS Joan CHALOUPKOVÁ Radka BEDNÁŘ David PROKOP Zbyněk BORNSCHEUER Uwe T. HOLLFELDER Florian DAMBORSKÝ Jiří

  Conference abstract

  Year: 2021, type: Conference abstract