doc. Mgr. David Bednář, Ph.D.

2021

• Computational design of enzymes for biotechnological applications

  PLANAS IGLESIAS Joan MARQUES Sérgio Manuel RANGEL PAMPLONA PIZARRO PINTO José Gaspar MUSIL Miloš ŠTOURAČ Jan DAMBORSKÝ Jiří BEDNÁŘ David

  Peer-reviewed scientific article

  Biotechnology Advances, year: 2021, volume: 47, edition: March–April, DOI

• Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers

  MARKOVÁ Klára KUNKA Antonín CHMELOVÁ Klaudia HAVLÁSEK Martin BABKOVÁ Petra MARQUES Sérgio Manuel VAŠINA Michal PLANAS IGLESIAS Joan CHALOUPKOVÁ Radka BEDNÁŘ David PROKOP Zbyněk DAMBORSKÝ Jiří MAREK Martin

  Peer-reviewed scientific article

  ACS Catalysis, year: 2021, volume: 11, edition: 21, DOI

• Designované a syntetizované geny kódující nově zkonstruované proteinové katalyzátory (luciferázy) s ověřenými vlastnostmi

  MAREK Martin DAMBORSKÝ Jiří BEDNÁŘ David PLUSKAL Daniel MAJEROVÁ Marika PLANAS IGLESIAS Joan

  Prototype, functioning sample

  Year: 2021

• Engineering the protein dynamics of an ancestral luciferase

  SCHENKMAYEROVÁ Andrea RANGEL PAMPLONA PIZARRO PINTO José Gaspar TOUL Martin MAREK Martin HERNYCHOVÁ Lenka PLANAS IGLESIAS Joan LIŠKOVÁ Veronika PLUSKAL Daniel VAŠINA Michal EMOND Stephane DÖRR Mark CHALOUPKOVÁ Radka BEDNÁŘ David PROKOP Zbyněk HOLLFELDER Florian BORNSCHEUER Uwe T. DAMBORSKÝ Jiří

  Peer-reviewed scientific article

  Nature Communications, year: 2021, volume: 12, edition: 1, DOI

• Exploring mechanism of enzyme catalysis by on-chip transient kinetics coupled with global data analysis and molecular modeling

  HESS David DOČKALOVÁ Veronika KOKKONEN Piia Pauliina BEDNÁŘ David DAMBORSKÝ Jiří DEMELLO Andrew PROKOP Zbyněk STAVRAKIS Stavros

  Peer-reviewed scientific article

  Chem, year: 2021, volume: 7, edition: 4, DOI

• FireProt(ASR): A Web Server for Fully Automated Ancestral Sequence Reconstruction

  MUSIL Miloš KHAN Rayyan Tariq BEIER Andy ŠTOURAČ Jan KONEGGER Hannes DAMBORSKÝ Jiří BEDNÁŘ David

  Peer-reviewed scientific article

  Briefings in Bioinformatics, year: 2021, volume: 22, edition: 4, DOI

• Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning

  RANGEL PAMPLONA PIZARRO PINTO José Gaspar VÁVRA Ondřej MARQUES Sérgio Manuel FILIPOVIČ Jiří BEDNÁŘ David DAMBORSKÝ Jiří

  Peer-reviewed scientific article

  Computational and Structural Biotechnology Journal, year: 2021, volume: 19, edition: May, DOI

• SoluProt: prediction of soluble protein expression in Escherichia coli

  HON Jiří MARUSIAK Martin MARTINEK Tomas KUNKA Antonín ZENDULKA Jaroslav BEDNÁŘ David DAMBORSKÝ Jiří

  Peer-reviewed scientific article

  Bioinformatics, year: 2021, volume: 37, edition: 1, DOI

• Substrate inhibition by the blockage of product release and its control by tunnel engineering

  KOKKONEN Piia Pauliina BEIER Andy MAZURENKO Stanislav DAMBORSKÝ Jiří BEDNÁŘ David PROKOP Zbyněk

  Peer-reviewed scientific article

  RSC Chemical Biology, year: 2021, volume: 2, edition: 2, DOI

• Thermostable FGF2 polypeptide, use thereof

  DVOŘÁK Petr KREJČÍ Pavel BÁLEK Lukáš EISELLEOVÁ Lívia KONEČNÁ Žaneta DVOŘÁK Pavel BEDNÁŘ David BREZOVSKÝ Jan ŠEBESTOVÁ Eva CHALOUPKOVÁ Radka ŠTĚPÁNKOVÁ Veronika VAŇÁČEK Pavel PROKOP Zbyněk DAMBORSKÝ Jiří BOSÁKOVÁ Michaela

  Patent

  Publisher: Australian Patent Office, state: Australia, patent's number: AU2016359722, year: 2021