doc. Mgr. David Bednář, Ph.D.

2020

• Thermostable FGF2 Polypeptide, Use Thereof

  DVOŘÁK Petr KREJČÍ Pavel BÁLEK Lukáš EISELLEOVÁ Lívia KONEČNÁ Žaneta DVOŘÁK Pavel BEDNÁŘ David BREZOVSKÝ Jan ŠEBESTOVÁ Eva CHALOUPKOVÁ Radka ŠTĚPÁNKOVÁ Veronika VAŇÁČEK Pavel PROKOP Zbyněk DAMBORSKÝ Jiří BOSÁKOVÁ Michaela

  Patent

  Publisher: European Patent Office, state: Germany, patent's number: EP3380508, year: 2020

2019

• Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport

  ŠTOURAČ Jan VÁVRA Ondřej KOKKONEN Piia Pauliina FILIPOVIČ Jiří RANGEL PAMPLONA PIZARRO PINTO José Gaspar BREZOVSKÝ Jan DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Nucleic acids research, year: 2019, volume: 47, edition: W1, DOI

• Caver web: identification of tunnels and channels in proteins and analysis of ligand transport

  ŠTOURAČ Jan VAVRA O. KOKKONEN Piia Pauliina FILIPOVIČ Jiří FONSECA PINTO Gabriela Filipa SCHENKMAYEROVÁ Andrea DAMBORSKÝ Jiří BEDNÁŘ David

  Conference abstract

  Year: 2019, type: Conference abstract

• CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels

  VÁVRA Ondřej FILIPOVIČ Jiří PLHÁK Jan BEDNÁŘ David MARQUES Sérgio Manuel BREZOVSKÝ Jan ŠTOURAČ Jan MATYSKA Luděk DAMBORSKÝ Jiří

  Article in Periodical

  Bioinformatics, year: 2019, volume: 35, edition: 23, DOI

• Computational Design of Stable and Soluble Biocatalysts

  MUSIL Miloš KONEGGER Hannes HON Jiří BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  ACS Catalysis, year: 2019, volume: 9, edition: 2, DOI

• Computational Study of Protein-Ligand Unbinding for Enzyme Engineering

  MARQUES Sérgio Manuel BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  FRONTIERS IN CHEMISTRY, year: 2019, volume: 6, edition: JAN 2019, DOI

• Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17

  CHRÁST Lukáš TRATSIAK K. PLANAS IGLESIAS Joan DANIEL Lukáš PRUDNIKOVA T. BREZOVSKÝ Jan BEDNÁŘ David SMATANOVA I.K. CHALOUPKOVÁ Radka DAMBORSKÝ Jiří

  Article in Periodical

  Microorganisms, year: 2019, volume: 7, edition: 11, DOI

• Engineering enzyme access tunnels

  KOKKONEN Piia Pauliina BEDNÁŘ David PINTO G. PROKOP Zbyněk DAMBORSKÝ Jiří

  Article in Periodical

  BIOTECHNOLOGY ADVANCES, year: 2019, volume: 37, edition: 6, DOI

• Fast Screening of Inhibitor Binding/Unbinding using Novel Software Tool CaverDock

  RANGEL PAMPLONA PIZARRO PINTO José Gaspar VÁVRA Ondřej FILIPOVIČ Jiří ŠTOURAČ Jan BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  FRONTIERS IN CHEMISTRY, year: 2019, volume: 7, edition: OCT 29 2019, DOI

• Functional switching based on altered enzyme flexibility via InDel mutagenesis of a reconstructed ancestor

  SCHENKMAYEROVA A. PINTO G. MAREK Martin TOUL Martin HERNYCHOVÁ Lenka LIŠKOVÁ Veronika EMOND S. BEDNÁŘ David PROKOP Zbyněk CHALOUPKOVÁ Radka HOLLFELDER F. BORNSCHEUER U.T.

  Conference abstract

  Year: 2019, type: Conference abstract