doc. Mgr. David Bednář, Ph.D.

2020

• DockVis: Visual Analysis of Molecular Docking Trajectories

  FURMANOVÁ Katarína VÁVRA Ondřej KOZLÍKOVÁ Barbora DAMBORSKÝ Jiří VONÁSEK Vojtěch BEDNÁŘ David BYŠKA Jan

  Peer-reviewed scientific article

  Computer Graphics Forum, year: 2020, volume: 39, edition: 6, DOI

2019

• Caver web: identification of tunnels and channels in proteins and analysis of ligand transport

  ŠTOURAČ Jan VAVRA O. KOKKONEN Piia Pauliina FILIPOVIČ Jiří FONSECA PINTO Gabriela Filipa SCHENKMAYEROVÁ Andrea DAMBORSKÝ Jiří BEDNÁŘ David

  Conference abstract

  Year: 2019, type: Conference abstract, DOI

• Computational Design of Stable and Soluble Biocatalysts

  MUSIL Miloš KONEGGER Hannes HON Jiří BEDNÁŘ David DAMBORSKÝ Jiří

  Peer-reviewed scientific article

  ACS Catalysis, year: 2019, volume: 9, edition: 2, DOI

• Computational Study of Protein-Ligand Unbinding for Enzyme Engineering

  MARQUES Sérgio Manuel BEDNÁŘ David DAMBORSKÝ Jiří

  Peer-reviewed scientific article

  FRONTIERS IN CHEMISTRY, year: 2019, volume: 6, edition: JAN 2019, DOI

• Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17

  CHRÁST Lukáš TRATSIAK K. PLANAS IGLESIAS Joan DANIEL Lukáš PRUDNIKOVA T. BREZOVSKÝ Jan BEDNÁŘ David SMATANOVA I.K. CHALOUPKOVÁ Radka DAMBORSKÝ Jiří

  Peer-reviewed scientific article

  Microorganisms, year: 2019, volume: 7, edition: 11, DOI

• Engineering enzyme access tunnels

  KOKKONEN Piia Pauliina BEDNÁŘ David PINTO G. PROKOP Zbyněk DAMBORSKÝ Jiří

  Peer-reviewed scientific article

  BIOTECHNOLOGY ADVANCES, year: 2019, volume: 37, edition: 6, DOI

• Fast Screening of Inhibitor Binding/Unbinding using Novel Software Tool CaverDock

  RANGEL PAMPLONA PIZARRO PINTO José Gaspar VÁVRA Ondřej FILIPOVIČ Jiří ŠTOURAČ Jan BEDNÁŘ David DAMBORSKÝ Jiří

  Peer-reviewed scientific article

  FRONTIERS IN CHEMISTRY, year: 2019, volume: 7, edition: OCT 29 2019, DOI

• Functional switching based on altered enzyme flexibility via InDel mutagenesis of a reconstructed ancestor

  SCHENKMAYEROVA A. PINTO G. MAREK Martin TOUL Martin HERNYCHOVÁ Lenka LIŠKOVÁ Veronika EMOND S. BEDNÁŘ David PROKOP Zbyněk CHALOUPKOVÁ Radka HOLLFELDER F. BORNSCHEUER U.T.

  Conference abstract

  Year: 2019, type: Conference abstract, DOI

• Structural Biology and Protein Engineering of Thrombolytics

  MIČAN Jan TOUL Martin BEDNÁŘ David DAMBORSKÝ Jiří

  Peer-reviewed scientific article

  Computational and Structural Biology Journal, year: 2019, volume: 17, edition: 2019, DOI

2018

• Engineering of enzyme gating driven by molecular dynamics, transient kinetics, and single molecule spectroscopy

  PROKOP Zbyněk GHOSE A. KOKKONEN Piia Pauliina SYKORA J. BEDNÁŘ David AMARO M. NEVOLOVÁ Šárka HOF M. DAMBORSKÝ Jiří

  Conference abstract

  Year: 2018, type: Conference abstract