Project information
Mechanisms involved in regulation of respiratory systems in denitrification bacteria by environmental factors
- Project Identification
- GA203/01/1589
- Project Period
- 1/2001 - 1/2003
- Investor / Pogramme / Project type
-
Czech Science Foundation
- Standard Projects
- MU Faculty or unit
- Faculty of Science
Regulation of many genes in denitrification bacteria is mediated by members of the E. coli FNR class of transcription activators. Disruption of their iron-sulfur centers upon direct reaction with oxygen diminishes the ability to form a dimer and bind DNA . However, there are observations suggesting that oxygen may also act indirectly by decreasing the degree of reduction of intracellular redox active components and affecting the cytoplasmic concentration of Fe(II). Three complementary ways to explore thi s hypothesis are proposed. (1) Gene expression at the protein level (2D-gel electrophoresis protein database, individual hemoproteins and respiratory enzymes), the content of individual hemes and FNR-dependent promoter activity can be assayed to compare the responses of the oxically grown cell culture to intracellular redox shifts due to limited aeration, the inhibition of respiratory enzymes or the presence of a thiol compound. (2) Regulatory mutants with a modified denitrification pathway can be obtai
Publications
Total number of publications: 15
2004
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Examination of membrane protein expression in Paracoccus denitrificans by two-dimensional gel electrophoresis
Journal of Basic Microbiology, year: 2004, volume: 44, edition: 1
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Isolation and biochemical characterization of two soluble iron(III) reductases from Paracoccus denitrificans
European Journal of Biochemistry, year: 2004, volume: 271, edition: 3
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Protein composition of Paracoccus denitrificans cells grown on various electron acceptors and in the presence of azide
Proteomics, year: 2004, volume: 4, edition: 9
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Proteome study on bacterium Paracoccus denitrificans and construction of 2-DE protein database
VIII. Pracovní setkání biochemiků a molekulárních biologů. Sborník příspěvků., year: 2004
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The effects of terminal electron acceptor and sodium azide on the Paracoccus denitrificans protein composition
Acta Universitatis Palackianae Olomucensis - Chemica 43S, year: 2004
2003
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Analýza proteomu bakterie Paracoccus denitrificans
VII. Pracovní setkání biochemiků a molekulárních biologů. Sborník příspěvků, year: 2003
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Dvourozměrná elektroforéza v proteomice: Principy a aplikace
Chemické listy, year: 2003, volume: 97, edition: 1
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Fine-tuned regulation by oxygen and nitric oxide of the activity of a semi-synthetic FNR-dependent promoter and expression of denitrification enzymes in Paracoccus denitrificans
Microbiology, year: 2003, volume: 149, edition: 12
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Towards the Paracoccus denitrificans 2-DE protein database
Proteomic Forum, München 2003. International Meeting on Proteome Analysis. September 14-17, 2003, year: 2003
2002
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Analysis of membrane proteome of Paracoccus denitrificans by two-dimensional electrophoresis
XVIII. biochemický zjazd. Zborník., year: 2002