Mgr. Ondřej Vávra, Ph.D.

2020

• DockVis: Visual Analysis of Molecular Docking Trajectories

  FURMANOVÁ Katarína VÁVRA Ondřej KOZLÍKOVÁ Barbora DAMBORSKÝ Jiří VONÁSEK Vojtěch BEDNÁŘ David BYŠKA Jan

  Article in Periodical

  Computer Graphics Forum, year: 2020, volume: 39, edition: 6, DOI

2019

• Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport

  ŠTOURAČ Jan VÁVRA Ondřej KOKKONEN Piia Pauliina FILIPOVIČ Jiří RANGEL PAMPLONA PIZARRO PINTO José Gaspar BREZOVSKÝ Jan DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Nucleic acids research, year: 2019, volume: 47, edition: W1, DOI

• CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels

  VÁVRA Ondřej FILIPOVIČ Jiří PLHÁK Jan BEDNÁŘ David MARQUES Sérgio Manuel BREZOVSKÝ Jan ŠTOURAČ Jan MATYSKA Luděk DAMBORSKÝ Jiří

  Article in Periodical

  Bioinformatics, year: 2019, volume: 35, edition: 23, DOI

• Fast Screening of Inhibitor Binding/Unbinding using Novel Software Tool CaverDock

  RANGEL PAMPLONA PIZARRO PINTO José Gaspar VÁVRA Ondřej FILIPOVIČ Jiří ŠTOURAČ Jan BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  FRONTIERS IN CHEMISTRY, year: 2019, volume: 7, edition: OCT 29 2019, DOI

• Visual Analysis of Ligand Trajectories in Molecular Dynamics

  JURČÍK Adam FURMANOVÁ Katarína BYŠKA Jan VONÁSEK Vojtěch VÁVRA Ondřej ULBRICH Pavol HAUSER Helwig KOZLÍKOVÁ Barbora

  Article in Proceedings

  IEEE Pacific Visualization Symposium 2019, year: 2019

2018

• A Haloalkane Dehalogenase From a Marine Microbial Consortium Possessing Exceptionally Broad Substrate Specificity

  BURYŠKA Tomáš BABKOVÁ Petra VÁVRA Ondřej DAMBORSKÝ Jiří PROKOP Zbyněk

  Article in Periodical

  APPLIED AND ENVIRONMENTAL MICROBIOLOGY, year: 2018, volume: 84, edition: 2

2017

• CaverDock 1.0

  FILIPOVIČ Jiří VÁVRA Ondřej PLHÁK Jan BEDNÁŘ David MARQUES Sérgio Manuel BREZOVSKÝ Jan MATYSKA Luděk DAMBORSKÝ Jiří

  Software

  Year: 2017

2016

• HotSpot Wizard 2.0: Automated Design of Site-Specific Mutations and Smart Libraries in Protein Engineering

  BENDL J. ŠTOURAČ Jan ŠEBESTOVÁ Eva VÁVRA Ondřej MUSIL Miloš BREZOVSKÝ Jan DAMBORSKÝ Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2016, volume: 44, edition: W1, DOI

2015

• HotSpot Wizard 2.0

  ŠTOURAČ Jan BENDL Jaroslav ŠEBESTOVÁ Eva VÁVRA Ondřej MUSIL Miloš BREZOVSKÝ Jan DAMBORSKÝ Jiří

  Software

  Year: 2015