Ing. Simeon Borko

2024

• A computational workflow for analysis of missense mutations in precision oncology

  KHAN Rayyan Tariq POKORNÁ Petra DVORSKÝ Jan BORKO Simeon AREFIEV Ihor PLANAS IGLESIAS Joan DOBIÁŠ Adam RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří MAZURENKO Stanislav BEDNÁŘ David

  Article in Periodical

  JOURNAL OF CHEMINFORMATICS, year: 2024, volume: 16, edition: 1, DOI

• AggreProt: a web server for predicting and engineering aggregation prone regions in proteins

  PLANAS IGLESIAS Joan BORKO Simeon SWIATKOWSKI Jan ELIAS Matej HAVLÁSEK Martin SALAMON Ondrej GRAKOVA Ekaterina KUNKA Antonín MARTINOVIC Tomas DAMBORSKÝ Jiří MARTINOVIC Jan BEDNÁŘ David

  Article in Periodical

  Nucleic Acids Research, year: 2024, volume: 52, edition: W1, DOI

• Analysis of mutations in precision oncology using the automated, accurate, and user-friendly web tool PredictONCO

  KHAN Rayyan Tariq POKORNÁ Petra DVORSKÝ Jan BORKO Simeon DOBIÁŠ Adam PLANAS IGLESIAS Joan MAZURENKO Stanislav AREFIEV Ihor RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav DAMBORSKÝ Jiří SLABÝ Ondřej BEDNÁŘ David

  Article in Periodical

  Computational and Structural Biotechnology Journal, year: 2024, volume: 24, edition: December 2024, DOI

• FireProt 2.0: web-based platform for the fully automated design of thermostable proteins

  MUSIL Miloš JEZIK Andrej HORÁČKOVÁ Jana BORKO Simeon KABOUREK Petr DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Briefings in Bioinformatics, year: 2024, volume: 25, edition: 1, DOI

• PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning

  ŠTOURAČ Jan BORKO Simeon KHAN Rayyan Tariq POKORNÁ Petra DOBIÁŠ Adam PLANAS IGLESIAS Joan MAZURENKO Stanislav RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Briefings in Bioinformatics, year: 2024, volume: 25, edition: 1, DOI

2022

• PredictSNP Onco 1.0

  ŠTOURAČ Jan KHAN Rayyan Tariq BORKO Simeon POKORNÁ Petra DOBIÁŠ Adam RANGEL PAMPLONA PIZARRO PINTO José Gaspar ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří BEDNÁŘ David

  Software

  Year: 2022