Joan Planas Iglesias

2024

• A computational workflow for analysis of missense mutations in precision oncology

  KHAN Rayyan Tariq POKORNÁ Petra DVORSKÝ Jan BORKO Simeon AREFIEV Ihor PLANAS IGLESIAS Joan DOBIÁŠ Adam RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří MAZURENKO Stanislav BEDNÁŘ David

  Article in Periodical

  JOURNAL OF CHEMINFORMATICS, year: 2024, volume: 16, edition: 1, DOI

• AggreProt: a web server for predicting and engineering aggregation prone regions in proteins

  PLANAS IGLESIAS Joan BORKO Simeon SWIATKOWSKI Jan ELIAS Matej HAVLÁSEK Martin SALAMON Ondrej GRAKOVA Ekaterina KUNKA Antonín MARTINOVIC Tomas DAMBORSKÝ Jiří MARTINOVIC Jan BEDNÁŘ David

  Article in Periodical

  Nucleic acids research, year: 2024, volume: 52, edition: W1, DOI

• CoVAMPnet: Comparative Markov State Analysis for Studying Effects of Drug Candidates on Disordered Biomolecules

  MARQUES Sérgio Manuel KOUBA Petr LEGRAND Anthony Thomas P SEDLAR Jiri DISSON Lucas PLANAS IGLESIAS Joan SANUSI Zainab Kemi KUNKA Antonín DAMBORSKÝ Jiří PAJDLA Tomas PROKOP Zbyněk MAZURENKO Stanislav SIVIC Josef BEDNÁŘ David

  Article in Periodical

  JACS AU, year: 2024, volume: 4, edition: 6, DOI

• PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning

  ŠTOURAČ Jan BORKO Simeon KHAN Rayyan Tariq POKORNÁ Petra DOBIÁŠ Adam PLANAS IGLESIAS Joan MAZURENKO Stanislav RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Briefings in Bioinformatics, year: 2024, volume: 25, edition: 1, DOI

• Visual Support for the Loop Grafting Workflow on Proteins

  OPÁLENÝ Filip ULBRICH Pavol PLANAS IGLESIAS Joan BYŠKA Jan ŠTOURAČ Jan BEDNÁŘ David FURMANOVÁ Katarína KOZLÍKOVÁ Barbora

  Article in Periodical

  IEEE Transactions on Visualization and Computer Graphics, year: 2024

2023

• Domino-like effect of C112R mutation on ApoE4 aggregation and its reduction by Alzheimer’s Disease drug candidate

  NEMERGUT Michal MARQUES Sérgio Manuel UHRÍK Lukáš VÁŇOVÁ Tereza NEZVEDOVÁ Markéta GADARA Darshak Chandulal JHA Durga TULIS Jan NOVÁKOVÁ Veronika PLANAS IGLESIAS Joan KUNKA Antonín LEGRAND Anthony Thomas P HŘÍBKOVÁ Hana POSPÍŠILOVÁ Veronika SEDMÍK Jiří RAŠKA Jan PROKOP Zbyněk DAMBORSKÝ Jiří BOHAČIAKOVÁ Dáša SPÁČIL Zdeněk HERNYCHOVÁ Lenka BEDNÁŘ David MAREK Martin

  Article in Periodical

  Molecular Neurodegeneration, year: 2023, volume: 18, edition: 1, DOI

• SBILib: a handle for protein modeling and engineering

  GOHL Patrick BONET Jaume FORNES Oriol PLANAS IGLESIAS Joan FERNANDEZ-FUENTES Narcis OLIVA Baldo

  Article in Periodical

  Bioinformatics, year: 2023, volume: 39, edition: 10, DOI

• Study of Protein Conformational Dynamics Using Hydrogen/Deuterium Exchange Mass Spectrometry

  UHRIK Lukas HENEK Tomas PLANAS IGLESIAS Joan KUCERA Josef DAMBORSKÝ Jiří MAREK Martin HERNYCHOVA Lenka

  Chapter of a book

  Advanced Methods in Structural Biology, year: 2023, number of pages: 26 s.

2022

• Characterization of the AGR2 Interactome Uncovers New Players of Protein Disulfide Isomerase Network in Cancer Cells

  BOUCHALOVÁ Pavla SOMMEROVÁ Lucia POTĚŠIL David MARTIŠOVÁ Andrea LAPČÍK Petr BRYCHTOVÁ Veronika SCHERL Alexander VOŇKA Petr PLANAS IGLESIAS Joan CHEVET Eric BOUCHAL Pavel HRSTKA Roman

  Article in Periodical

  Molecular & Cellular Proteomics, year: 2022, volume: 21, edition: 2, DOI

• LoopGrafter: a web tool for transplanting dynamical loops for protein engineering

  PLANAS IGLESIAS Joan OPÁLENÝ Filip ULBRICH Pavol ŠTOURAČ Jan SANUSI Zainab Kemi RANGEL PAMPLONA PIZARRO PINTO José Gaspar SMITH Andrea BYŠKA Jan DAMBORSKÝ Jiří KOZLÍKOVÁ Barbora BEDNÁŘ David

  Article in Periodical

  Nucleic acids research, year: 2022, volume: 50, edition: W1, DOI