Stanislav Mazurenko, PhD

2024

• Exploring new galaxies: Perspectives on the discovery of novel PET-degrading enzymes

  MIČAN Jan JARADAT Da 'san M. M. LIU Weidong WEBER Gert MAZURENKO Stanislav BORNSCHEUER Uwe T. DAMBORSKÝ Jiří WEI Ren BEDNÁŘ David

  Article in Periodical

  Applied Catalysis B: Environment and Energy, year: 2024, volume: 342, edition: March 2024, DOI

• GASP: A Pan-Specific Predictor of Family 1 Glycosyltransferase Acceptor Specificity Enabled by a Pipeline for Substrate Feature Generation and Large-Scale Experimental Screening

  HARDING-LARSEN David MADSEN Christian Degnbol TEZE David KITTILA Tiia LANGHORN Mads Rosander GHARABLI Hani HOBUSCH Mandy OTALVARO Felipe Mejia KIRTEL Onur BIDART Gonzalo Nahuel MAZURENKO Stanislav TRAVNIK Evelyn WELNER Ditte Hededam

  Article in Periodical

  ACS Omega, year: 2024, volume: 9, edition: 25, DOI

• Klasifikátor vazebných kapes v proteinech založený na strojovém učení

  HADDADI Faraneh VÁVRA Ondřej BEDNÁŘ David MAZURENKO Stanislav DAMBORSKÝ Jiří

  Software

  Year: 2024

• Kód fyziologického farmakokinetického modelu (PBPK) v MatLabu pro simulaci časově závislých koncentrací chemických látek v lidském těle

  DOMÍNGUEZ-ROMERO Elena MAZURENKO Stanislav SCHERINGER Martin MARTINS DOS SANTOS Vítor A.P. EVELO Chris T. ANTON Mihail HANCOCK John M ŽUPANIČ Anže SUAREZ-DIEZ Maria

  Software

  Year: 2024

• Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme-ligand complexes

  VÁVRA Ondřej TYZACK J. HADDADI Faraneh DVORSKÝ Jan DAMBORSKÝ Jiří MAZURENKO Stanislav THORNTON J.M. BEDNÁŘ David

  Article in Periodical

  Journal of Cheminformatics, year: 2024, volume: 16, edition: 1, DOI

• Learning to design protein-protein interactions with enhanced generalization

  BUSHUIEV Anton BUSHUIEV Roman KOUBA Petr FILKIN Anatolii GABRIELOVA Marketa GABRIEL Michal SEDLAR Jiri PLUSKAL4 Tomas DAMBORSKÝ Jiří MAZURENKO Stanislav SIVIC Josef

  Article in Proceedings

  12th International Conference on Learning Representations 2024, year: 2024

• Making PBPK models more reproducible in practice

  DOMINGUEZ ROMERO Elena MAZURENKO Stanislav SCHERINGER Martin DOS SANTOS Martins Vitor A. P. EVELO Chris T. ANTON Mihail HANCOCK John M. ZUPANIC Anze SUAREZ-DIEZ Maria

  Article in Periodical

  Briefings in Bioinformatics, year: 2024, volume: 25, edition: 6, DOI

• PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning

  ŠTOURAČ Jan BORKO Simeon KHAN Rayyan Tariq POKORNÁ Petra DOBIÁŠ Adam PLANAS IGLESIAS Joan MAZURENKO Stanislav RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Briefings in Bioinformatics, year: 2024, volume: 25, edition: 1, DOI

• Protein representations: Encoding biological information for machine learning in biocatalysis

  HARDING-LARSEN David FUNK Jonathan MADSEN Niklas Gesmar GHARABLI Hani ACEVEDO-ROCHA Carlos G. MAZURENKO Stanislav WELNER Ditte Hededam

  Article in Periodical

  Biotechnology Advances, year: 2024, volume: 77, edition: December 2024, DOI

• Revealing data leakage in protein interaction benchmarks

  BUSHUIEV Anton BUSHUIEV Roman SEDLAR Jiri PLUSKAL Tomas DAMBORSKÝ Jiří MAZURENKO Stanislav SIVIC Josef

  Article in Proceedings

  ICLR 2024 Workshop on Generative and Experimental Perspectives for Biomolecular Design, year: 2024